Intron feature analyses
Recombination rate
##
## Biallelic POE
## 5377 823
##
## Welch Two Sample t-test
##
## data: recomb by PSGE
## t = -3.6936, df = 1106.2, p-value = 0.0002319
## alternative hypothesis: true difference in means between group Biallelic and group POE is not equal to 0
## 95 percent confidence interval:
## -2.4838282 -0.7604234
## sample estimates:
## mean in group Biallelic mean in group POE
## 19.60765 21.22978
% intron
##
## Biallelic POE
## 6609 885
##
## Welch Two Sample t-test
##
## data: pctintron by PSGE
## t = -6.6588, df = 1148, p-value = 4.271e-11
## alternative hypothesis: true difference in means between group Biallelic and group POE is not equal to 0
## 95 percent confidence interval:
## -0.08463530 -0.04611052
## sample estimates:
## mean in group Biallelic mean in group POE
## 0.5197719 0.5851448
Intron GC
##
## Biallelic POE
## 6609 885
##
## Welch Two Sample t-test
##
## data: GCpercent by PSGE
## t = -7.1792, df = 1098.4, p-value = 1.289e-12
## alternative hypothesis: true difference in means between group Biallelic and group POE is not equal to 0
## 95 percent confidence interval:
## -0.03293546 -0.01879670
## sample estimates:
## mean in group Biallelic mean in group POE
## 0.2465887 0.2724548
Intron CpG density
##
## Biallelic POE
## 6609 885
##
## Welch Two Sample t-test
##
## data: GCdens by PSGE
## t = -6.3152, df = 1009.8, p-value = 4.036e-10
## alternative hypothesis: true difference in means between group Biallelic and group POE is not equal to 0
## 95 percent confidence interval:
## -0.009421369 -0.004954411
## sample estimates:
## mean in group Biallelic mean in group POE
## 0.03452846 0.04171635
