Appendix D-1 WGS, mRNA-seq, and ChIP-seq

1.1 WGS

• Blocks 1&2: descriptive statistics for NGS reads
• Blocks 3&4: descriptive statistics for NGS reads

1.2 mRNA-seq

• 192hpf larvae: descriptive statistics for NGS reads
• 24hpf eggs: descriptive statistics for NGS reads

1.3 ChIP-seq

• 192hpf larvae: descriptive statistics for NGS reads

Example WL sheared chromatin sample.

Example QL sheared chromatin sample.

Example cross-correlation plot of ChIP-seq library after alignment and filtering.