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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.15

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-04-04, 13:41 EDT based on data in: /scratch/stb5321/IGC-larvae/reports/embryo/DNA

        General Statistics

        Showing 8/8 rows and 5/7 columns.
        Sample Name% DuplicationM Reads After FilteringGC content% PF% Adapter
        1AD_R1
        10.5%
        69.0
        32.4%
        98.3%
        1.1%
        1AQ_R1
        15.2%
        74.9
        30.1%
        98.6%
        0.9%
        1BD_R1
        14.3%
        58.4
        29.7%
        98.5%
        1.0%
        1BQ_R1
        12.2%
        71.1
        30.7%
        98.5%
        1.1%
        2AD_R1
        9.9%
        65.3
        32.6%
        98.5%
        1.0%
        2AQ_R1
        13.5%
        57.2
        29.5%
        98.5%
        0.8%
        2BD_R1
        14.2%
        61.1
        29.6%
        98.6%
        1.0%
        2BQ_R1
        14.0%
        61.8
        30.4%
        98.6%
        0.8%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).DOI: 10.1093/bioinformatics/bty560.

        Filtered Reads

        Filtering statistics of sampled reads.

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        Insert Sizes

        Insert size estimation of sampled reads.

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        Sequence Quality

        Average sequencing quality over each base of all reads.

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        GC Content

        Average GC content over each base of all reads.

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        N content

        Average N content over each base of all reads.

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        MultiQC v1.15 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.