I am a computational and molecular geneticist and an Associate Data Scientist in the Department of Epidemiology and the Institute for Data Science in Oncology at the University of Texas MD Anderson Cancer Center, where I work with Dr. Arjun Bhattacharya and Dr. Paul Scheet. My research asks how early-life environmental exposures act through the genome, often through parent-of-origin and imprinting mechanisms, to shape lifelong disease risk. I first pursued this in evolutionary genomics, studying intragenomic conflict and gene-by-environment effects in social insects during my Ph.D., and I now study it in human placental biology, where the same conflict between parental genomes plays out in the tissue that governs fetal development.
My current program builds isoform-resolved maps of placental gene regulation and uses them to explain how genotype and prenatal exposure jointly program offspring health. Using long-read RNA sequencing, I assembled the largest placental transcriptome to date, uncovering 14,985 novel isoforms of known genes that are absent from standard adult-tissue annotations. On that foundation I am constructing the first multi-ancestry, isoform-resolved placental GxE-xQTL atlas across roughly 2,200 placentas from nine cohorts and five ancestry groups, mapping how gestational diabetes, pre-pregnancy obesity, and PFAS exposure modify fetal genetic control of isoform expression, splicing, and alternative transcript usage. This spans cis-xQTL mapping within and across ancestries, cross-ancestry fine-mapping and colocalization with childhood metabolic GWAS, locus-resolved heritability partitioning, and decomposition of genetic signals into direct fetal versus maternal indirect polygenic components. I also model parent-of-origin regulation and its disruption by exposure, accounting for somatic mosaicism in the placenta.
Much of my methods work makes these observational analyses causal. I develop mediation frameworks that combine genetically predicted expression as instruments with multi-omic negative controls, using generative adversarial networks to calibrate confounding bias, released in the open-source ICONIC R package. Alongside this, I run an independent bioinformatics consulting practice, evaluating therapeutic targets through pan-cancer TCGA and DepMap CRISPR analyses. I am currently seeking tenure-track Assistant Professor positions.

Sean T. Bresnahan, Hannah Yong, William H. Wu, Sierra Lopez, Jerry K. Y. Chan, Fergus White, Pierre-Étienne Jacques, Marie-France Hivert, Shiao-Yng Chan, Michael I. Love, Jonathan Y. Huang, Arjun Bhattacharya
Nature Communications 2026
Sean T. Bresnahan, Hannah Yong, William H. Wu, Sierra Lopez, Jerry K. Y. Chan, Fergus White, Pierre-Étienne Jacques, Marie-France Hivert, Shiao-Yng Chan, Michael I. Love, Jonathan Y. Huang, Arjun Bhattacharya
Nature Communications 2026

Sean T. Bresnahan, Hannah E. J. Yong, Martin G. Drelichman, Sarah N. Campbell, Anna E. Trapse, Gabriela R. Romo, Christina M. Cellini, Sierra Lopez, Jerry K. Yen Chan, Shiao-Yng Chan, Elana R. Elkin, Arjun Bhattacharya, Jonathan Y. Huang
bioRxiv 2026 ; in revision at Environmental Health Perspectives Preprint
Sean T. Bresnahan, Hannah E. J. Yong, Martin G. Drelichman, Sarah N. Campbell, Anna E. Trapse, Gabriela R. Romo, Christina M. Cellini, Sierra Lopez, Jerry K. Yen Chan, Shiao-Yng Chan, Elana R. Elkin, Arjun Bhattacharya, Jonathan Y. Huang
bioRxiv 2026 ; in revision at Environmental Health Perspectives Preprint

S. Taylor Head, Aryun Nemani, Yung-Han Chang, Tabitha A. Harrison, Sean T. Bresnahan, Joseph H. Rothstein, Weiva Sieh, Sara Lindström, Arjun Bhattacharya
bioRxiv 2026 ; in revision at Nature Genetics Preprint
S. Taylor Head, Aryun Nemani, Yung-Han Chang, Tabitha A. Harrison, Sean T. Bresnahan, Joseph H. Rothstein, Weiva Sieh, Sara Lindström, Arjun Bhattacharya
bioRxiv 2026 ; in revision at Nature Genetics Preprint

S. Taylor Head, Sean T. Bresnahan, Nolan Cole, William Wu, Arjun Bhattacharya
bioRxiv 2025 ; in revision at Nature Genetics Preprint
S. Taylor Head, Sean T. Bresnahan, Nolan Cole, William Wu, Arjun Bhattacharya
bioRxiv 2025 ; in revision at Nature Genetics Preprint

Yung-Han Chang, Sean T. Bresnahan, S. Taylor Head, Tabitha Harrison, Yao Yu, Chad D. Huff, Bogdan Pasaniuc, Sara Lindström, Arjun Bhattacharya
British Journal of Cancer, 133, 874-885. 2025
Yung-Han Chang, Sean T. Bresnahan, S. Taylor Head, Tabitha Harrison, Yao Yu, Chad D. Huff, Bogdan Pasaniuc, Sara Lindström, Arjun Bhattacharya
British Journal of Cancer, 133, 874-885. 2025